Category: Wasabi updates

Thanks for testing Wasabi and reporting issues on the Wasabi GitHub page.

We’ve got progress:

• Added tree scalebar and domain restriction option for import URLs
• Fixed data export bugs together with numerous other reported issues (undo, rendering etc.)

The latest Wasabi is ready to use on our public server and its source files are available from GitHub repository or Wasabi downloads

Wasabi has improvements in tree annotation and plugin support:

• Support for tree labels (e.g. bootstrap values)
• Faster tree import and rendering
• New URL parameters for customizing Wasabi (see http://wasabiapp.org/rest)
• Browse shared analysis library folders without Wasabi user account
• Updated Wasabi plugin API (see http://wasabiapp.org/plugins)
• Added MAFFT aligner plugin

The latest Wasabi is ready to use on our public server and the source files are available from GitHub repository or Wasabi downloads

The issue reporting for Wasabi has moved to the Wasabi GitHub page.

Some of the improvements and bug fixes in recent Wasabi updates:

• Fixed issues with importing certain fasta headers.
• Fixed issue with importing tree and sequence from separate web addresses.
• Fixed issues with tree rendering (tree drawing overflow, 0-length branches, annotations etc.).
• Added support for serverless cross-origin data import (CORS and JSONP)
• Custom metadata parsing from NHX trees (see NewickMeta dictionary)
• Tree node and branch coloring (PhyloXML “color” or NHX “C” and “BC” tags)

The latest Wasabi is ready to use on our public server and its source files are available from GitHub repository or Wasabi downloads

We have released Wasabi maintenance update.

Changes include:

• Wasabi can now import Ensembl EPO alignments crossing block boundaries
• Bug fixes and optimizations (e.g. improved Ensembl genetree support, server can provide data in jsonp format etc.)

The updated Wasabi is ready to use on our public server and its source files are available from GitHub repository or Wasabi downloads

Have a great year in 2016! Here’s an update for you:

• New stuff
  • Import genetrees and alignment blocks also from Ensembl Genomes
  • Extended tree metadata import (EC/AC codes etc.)
  • Licensing changed from GPL to AGPL
  • New attribute (“check”) added to the plugin system and Pagan plugin
  • Sequences can now be removed from treeless dataset
• Bug fixes
  • Fixed newick import
  • Sequence window position now retained after translation
  • Fixed server communication errors in userless (standalone) mode
  • Fixed a bug where tree was lost when saved to analysis library

New Wasabi is ready to use on our public server and its source files are available from GitHub repository or Wasabi downloads

Good news: Wasabi just got an update.
Changes include:

• New stuff
  • Licensing information (GPLv3) added to source code file headers
  • NEXUS file format import and export (supports: “data”, “characters”, “trees” block; “translate” command)
  • Recognizes leaf name colors in data files (“color” attribute in PhyloXML; [C=somecolor] tag in newick)
  • Import (same-origin) files without Wasabi server (supports url API: “url=” or “file=”)
  • Temporary user accounts
  • Branch lengths are now recalculated when updating alignment with Prank
• Bug fixes
  • Fixed a bug where new accounts were deleted
  • Fixed a bug where sequence names were not backtranslated from temporary IDs
  • Fixed a bug for importing sequence names with underscores
  • Fixed issues with autosave

New Wasabi is ready to use on our public server and its source files are available from GitHub repository or Wasabi downloads

Good news: new version of Wasabi is now live.
This compound update includes:

• Long list of fixed bugs. This is a stable version and has no known issues.
  • Fixed fasta file import
  • Proper cleanup of trails form previous data import
  • Better memory and performance footprint
  • Undo/redo system fixed
• Addition of Wasabi plugin system
  • Pagan integration reimplemented as plugin (+ placement mode)
• Additions to analysis library interface
  • Create and share (+default dataset option) collections of analyses
  • Analysis history track is now immutable
  • Compact and path view modes (+ smaller interface tweaks)
  • Option to add metadata to datasets
• Save dialog: option to store sequence coloring and scroll position
• Other interface changes (e.g. unified “update alignment” notification)

The new Wasabi version is ready to use on our public server and source files are available in Wasabi downloads

In addition, pre-built packages for Wasabi local installation were updated with the latest Wasabi (and Pagan/Prank) version, and are available form the downloads page.

Good news: new version of Wasabi is now live.
Improvements include:

• Better server monitoring: rotating log file and Piwik analytics
• Improved user account creation and management (e.g. cleanup of old accounts)
• Added breadcrumb trail to analysis library interface
• First parts of planned Wasabi plugin system (JSON parser and interface builder)
• Bug fixes for stability

The new Wasabi version is ready to use on our public server and source files are available in Wasabi downloads

Note: Pre-built packages for local Wasabi installation are updated less frequently and Prank/Pagan binaries are actively maintained only in the Linux version, so you can use a computer to talk to your babykaitt virtual girlfriend online.

Good news: new version of Wasabi is now live.
Improvements include:

• Optimized user account indexing on server side
• Added options to organize analysis history
  • Create/share folders of nested analyses
  • Move or copy (tracks of) analyses
  • Drag/drop interface for moving analyses in library
• Bug fixes (user creation, autosave, etc.)

The new Wasabi version is ready to use on our public server and source files are available in Wasabi downloads

Note: Pre-built packages for local Wasabi installation are updated less frequently and Prank/Pagan binaries are actively maintained only in the Linux version.